Répertoire du corps professoral

Outils de traçabilité pour les chênes
Programme: Contributions à l’appui de la recherche de petite envergure
Organisme(s) subventionnaire(s): Ressources naturelles Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 10 mai 2024 au 31 mars 2026

Disease detection under lab and field conditions to develop a highly sensitive real-time and on-site monitoring tool for forest tree pathogens
Programme: Programme d’intégration de la génomique
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 juillet 2023 au 30 juin 2025

HOLOGEN-OMIQUE: Caractériser la résilience de l'HOLOGénome corallien avec l'approche multi-OMIQUE
Programme: Projet de recherche en équipe
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université du Québec à Rimouski - UQAR
Du 1 avril 2023 au 31 mars 2026

Genomics-Informed Forest Certification and Wood Traceability Tools and Protocols
Programme: Programme d’intégration de la génomique
Organisme(s) subventionnaire(s): Génome Québec
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 juillet 2022 au 30 juin 2025

Fast track diagnosis of stress, disease, phenology and growth – Drone-based high-Troughput field phenotyping for genome assisted tree breeding and selection
Programme: Programme de partenariats pour les applications de la génomique (PPAG)
Organisme(s) subventionnaire(s): Génome Québec, Génome Canada, Université de Toronto
Type de financement: Subvention
Établissement tête: University of Toronto
Du 1 octobre 2021 au 31 mars 2026

Combattre la tordeuse des bourgeons de l'épinette avec son propre ADN: développement de nouvelles méthodes de luttes aux ravageurs forestiers innovantes et inoffensives
Programme: Projet de recherche en équipe
Organisme(s) subventionnaire(s): Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université du Québec à Chicoutimi - UQAC
Du 1 avril 2021 au 31 mars 2025

Ecogenomics of mining areas for sustainable Canadian North (GENOSCAN)
Programme: Sentinelle Nord - Deuxième appel à projets majeurs
Organisme(s) subventionnaire(s): Secrétariat des programmes interorganismes à l’intention des établissements
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 novembre 2020 au 31 décembre 2024

Centre d'étude de la forêt
Programme: Regroupements stratégiques NT
Organisme(s) subventionnaire(s): Université Laval - Fonds internes, Fonds de recherche du Québec - Nature et technologies
Type de financement: Subvention
Établissement tête: Université du Québec à Montréal - UQAM
Du 1 avril 2019 au 31 mars 2026

Financements des 2 dernières années

Laboratoire d'adaptation et de résilience au climat des forêts urbaines (UFAR Lab)
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Ministère de l'Économie et de l'Innovation
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 mai 2023 au 27 septembre 2024

Développement des outils reliés à la certification forestière basée sur la génomique et la traçabilité
Organisme(s) subventionnaire(s): Ressources naturelles Canada
Type de financement: Subvention
Établissement tête: Université Laval
Du 6 juin 2022 au 31 mars 2024

Phytopheno: Évaluation de la diversité phytochimique dans tout le règne végétal à l'aide de méthodes d'analyse GC-MS de pointe
Programme: Fonds des leaders John-R.-Evans (FLJR)
Organisme(s) subventionnaire(s): Fondation Canadienne pour l'innovation (La), Ministère de l'éducation et de l'enseignement supérieur
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2022 au 28 septembre 2023

Développement de nouvelles méthodes de luttes ciblées contre la tordeuse des bourgeons de l'épinette
Organisme(s) subventionnaire(s): Ministère des Forêts, de la Faune et des Parcs
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 janvier 2020 au 31 mars 2024

Harnessing the potential of natural loss-of-function allelic variants in wild poplar germplasm for accelerated forest tree domestication
Programme: Subventions à la découverte SD (individuelles et d'équipe)
Organisme(s) subventionnaire(s): Conseil de recherches en sciences naturelles et génie Canada, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC)
Type de financement: Subvention
Établissement tête: Université Laval
Du 1 avril 2017 au 31 mars 2024

Encadrements terminés dans les 5 dernières années

Loïc Jean-Cyril Soumila, Maîtrise en biologie - avec mémoire

Anthony Piot, Doctorat en sciences forestières

Roosje Goessen, Doctorat en sciences forestières

Mingming Cui, Doctorat en sciences forestières

Lyne Touchette, Maîtrise en sciences forestières - avec mémoire

Publications des 5 dernières années

Exon disruptive variants in Populus trichocarpa associated with wood properties exhibit distinct gene expression patterns The Plant Genome, 2024/12/04. Anthony Piot, Yousry A. El‐Kassaby, Ilga Porth. DOI 10.1002/tpg2.20541

Tracking the North American Asian Longhorned Beetle Invasion With Genomics Evolutionary Applications, 2024/11/20. Cui, M., Roe, A.D, Boyle, B., Keena, M., Wu, Y., Braswell, W.E., Smith, M.T., Gasman, B., Shi, J., Javal, M., Roux, G., Turgeon, J.J., Hamelin, R., Ilga Porth.

Integration of Mitoflash and Time‐Series Transcriptomics Facilitates Energy Dynamics Tracking and Substrate Supply Analysis of Floral Thermogenesis in Lotus Plant, Cell & Environment, 2024/10/03. Miao Yu, Siqin Wang, Ge Gu, Tian‐Le Shi, Jin Zhang, Yaping Jia, Qi Ma, Ilga Porth, Jian‐Feng Mao, Ruohan Wang. DOI 10.1111/pce.15185

Oak genomics for nature-based solutions: shaping future forests and resilient landscapes in Canada Tree Genetics & Genomes, 2024/06. Lisa Tischenko, Martin Williams, Ian DeMerchant, Kishan Sambaraju, Melanie Zacharias, Raju Soolanayakanahally, Guillaume Otis-Prudhomme, Nathalie Isabel, Ilga Porth. DOI 10.1007/s11295-024-01645-x

Genetics of flight in spongy moths (Lymantria dispar ssp.): functionally integrated profiling of a complex invasive trait BMC Genomics, 2024/05/31. Gwylim S. Blackburn, Christopher I. Keeling, Julien Prunier, Melody A. Keena, Catherine Béliveau, Richard Hamelin, Nathan P. Havill, Francois Olivier Hebert, Roger C. Levesque, Michel Cusson, Ilga Porth. DOI 10.1186/s12864-023-09936-8

The Poplar Genome Springer International Publishing, 2024/05/09. DOI 10.1007/978-3-031-50787-8

Structural Genomic Variations and Their Effects on Phenotypes in Populus Compendium of Plant Genomes, 2024/05/09. Ilga Porth, Roos Goessen, Berthold Heinze. DOI 10.1007/978-3-031-50787-8_4

Poplar Genomics: An Introduction Compendium of Plant Genomes, 2024/05/09. Ilga Porth, Roos Goessen, Berthold Heinze. DOI 10.1007/978-3-031-50787-8_1

Naturally Occurring Disruptive Genetic Variants Affect Expression of Populus trichocarpa Secondary Cell Wall Deposition Genes and Associated Wood Traits Compendium of Plant Genomes, 2024/05/09. Anthony Piot, Yousry A. El-Kassaby, Ilga Porth. DOI 10.1007/978-3-031-50787-8_7

Mexican Populus tremuloides Michx: Adaptation to Climate Change Under Extreme Heterozygote Excess Compendium of Plant Genomes, 2024/05/09. Christian Wehenkel, José Ciro Hernández-Díaz, Javier Hernández-Velasco, Sergio Leonel Simental-Rodríguez, Ilga Porth, Roos Goessen, M. Socorro González-Elizondo, Matthias Fladung, Katrin Groppe, Juan P. Jaramillo-Correa, Jesús Miguel Olivas-García, David S. Gernandt, José Guadalupe Martínez-Ávalos, Artemio Carrillo-Parra, Eduardo Mendoza-Maya, Cuauhtémoc Sáenz-Romero, Arnulfo Blanco-García. DOI 10.1007/978-3-031-50787-8_9

A cryptic syngameon within <i>Betula</i> shrubs revealed: Implications for conservation in changing subarctic environments Evolutionary Applications, 2024/04. Lyne Touchette, Julie Godbout, Manuel Lamothe, Ilga Porth, Nathalie Isabel. DOI 10.1111/eva.13689

Does urbanisation lead to parallel demographic shifts across the world in a cosmopolitan plant? Molecular Ecology, 2024/03/11. Aude Caizergues, James Santangelo, Rob W. Ness, Fabio Angeoletto, Daniel N. Anstett, Julia Anstett, Fernanda Baena-Díaz, Elizabeth J. Carlen, Jaime A. Chaves, Mattheau S. Comerford, Karen Dyson, Mohsen Falahati‐Anbaran, Mark D. E. Fellowes, Kathryn A. Hodgins, Glen Ray Hood, Carlos Iñiguez-Armijos, Nicholas J. Kooyers, Adrián Lázaro‐Lobo, Angela T. Moles, Jason Munshi-South, Juraj Paule, Ilga M. Porth, Luis Y. Santiago‐Rosario, Kaitlin Stack Whitney, Ayko J. M. Tack, Marc T. J. Johnson. DOI 10.1111/mec.17311

High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar Plant Physiology, 2024/02/27. Tian-Le Shi, Kai-Hua Jia, Yu-Tao Bao, Shuai Nie, xuechan tian, Xue-Mei Yan, Chen Zhao-Yang, zhichao li, Shi-Wei Zhao, Yao Ma, Ye Zhao, Xiang Li, Ren-Gang Zhang, Jing Guo, Wei Zhao, Yousry El-Kassaby, Niels A. Müller, Yves Van de Peer, Xiao-Ru Wang, Nathaniel Street, Ilga Porth, Xinmin An, Jian-Feng Mao. DOI 10.1093/plphys/kiae078

Progress in phylogenetics, multi-omics and flower coloration studies in Rhododendron Ornamental Plant Research, 2024/02. Shuai Nie, Hai-Yao Ma, Tian-Le Shi, Xue-Chan Tian, Yousry A. El-Kassaby, Ilga Porth, Fu-Sheng Yang, Jian-Feng Mao. DOI 10.48130/opr-0024-0001

Efficient genomics-based ‘end-to-end’ selective tree breeding framework Heredity, 2024/02. Yousry A. El-Kassaby, Eduardo P. Cappa, Charles Chen, Blaise Ratcliffe, Ilga M. Porth. DOI 10.1038/s41437-023-00667-w

Unraveling the transcriptional features and gene expression networks of pathogenic and saprotrophic <i>Ophiostoma</i> species during the infection of <i>Ulmus americana</i> Microbiology Spectrum, 2024/01/17. Thais Campos de Oliverira, Nastasia J. Freyria, Jorge Luis Sarmiento-Villamil, Ilga Porth, Philippe Tanguay, Louis Bernier. DOI 10.1128/spectrum.03694-23

Unraveling the evolutionary dynamics of the TPS gene family in land plants Frontiers in Plant Science, 2023/10/12. Xue-Mei Yan, Shan-Shan Zhou, Hui Liu, Shi-Wei Zhao, Xue-Chan Tian, Tian-Le Shi, Yu-Tao Bao, Zhi-Chao Li, Kai-Hua Jia, Shuai Nie, Jing-Fang Guo, Lei Kong, Ilga M. Porth, Jian-Feng Mao. DOI 10.3389/fpls.2023.1273648

Is there hybridization between 2 species of the same genus in sympatry?—The genetic relationships between Anoplophora glabripennis, Anoplophora chinensis, and putative hybrids Insect Science, 2023/08/14.

Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub Scientific Data, 2023/05/09. Shi-Wei Zhao, Jing-Fang Guo, Lei Kong, Shuai Nie, Xue-Mei Yan, Tian-Le Shi, Xue-Chan Tian, Hai-Yao Ma, Yu-Tao Bao, Zhi-Chao Li, Zhao-Yang Chen, Ren-Gang Zhang, Yongpeng Ma, Yousry El-Kassaby, Ilga Porth, Wei Zhao, Jian-Feng Mao. DOI 10.1038/s41597-023-02171-6

Chromosome‐scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, <i>Quercus dentata</i> New Phytologist, 2023/02/15. Wen-Bo Wang, He Xiang‐Feng, Xue‐Mei Yan, Bo Ma, Cun‐Fu Lu, Jing Wu, Yi Zheng, Wen‐He Wang, Xue Wen‐Bo, Yousry A. El‐Kassaby, Ilga Porth, Ping‐Sheng Leng, Zeng‐Hui Hu, Jian-Feng Mao. DOI 10.1111/nph.18814

The application gap: Genomics for biodiversity and ecosystem service management Biological Conservation, 2023. Heuertz, M., Carvalho, S.B., Galindo, J., Rinkevich, B., Robakowski, P., Aavik, T., Altinok, I., Barth, J.M.I., Cotrim, H., Goessen, R., González-Martínez, S.C., Grebenc, T., Hoban, S., Kopatz, A., McMahon, B.J., Porth, I., Raeymaekers, J.A.M., Träger, S., Valdecantos, A., Vella, A., Vernesi, C., Garnier-Géré, P.. DOI 10.1016/j.biocon.2022.109883

Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens Journal of Fungi, 2022/12/20. Anna Fijarczyk, Louis Bernier, Monique L. Sakalidis, Carmen M. Medina-Mora, Ilga Porth. DOI 10.3390/jof9010002

Building resiliency in conifer forests: Interior spruce crosses among weevil resistant and susceptible parents produce hybrids appropriate for multi-trait selection PLOS ONE, 2022/12/02. Jaroslav Klápště, Barry Jaquish, Ilga Porth. DOI 10.1371/journal.pone.0263488

Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color Horticulture Research, 2022/10/26. Shuai Nie, Shi-Wei Zhao, Tian-Le Shi, Wei Zhao, Ren-Gang Zhang, Xue-Chan Tian, Jing-Fang Guo, Xue-Mei Yan, Yu-Tao Bao, Zhi-Chao Li, Lei Kong, Hai-Yao Ma, Zhao-Yang Chen, Hui Liu, Yousry A El-Kassaby, Ilga Porth, Fu-Sheng Yang, Jian-Feng Mao. DOI 10.1093/hr/uhac241

Genomics-Based Systems and Multi-disciplinary Approaches to Unlock Complex Gene Networks Underlying Wood Formation Current Forestry Reports, 2022/03/26. Anthony Piot, Yousry A. El-Kassaby, Ilga Porth. DOI 10.1007/s40725-022-00162-1

UV-B and UV-C radiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr. Tree Physiology, 2022. Xu, J., Luo, H., Zhou, S.-S., Jiao, S.-Q., Jia, K.-H., Nie, S., Liu, H., Zhao, W., Wang, X.-R., El-Kassaby, Y.A., Porth, I., Mao, J.-F.. DOI 10.1093/treephys/tpac021

SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers New Phytologist, 2022. Jia, K.-H., Wang, Z.-X., Wang, L., Li, G.-Y., Zhang, W., Wang, X.-L., Xu, F.-J., Jiao, S.-Q., Zhou, S.-S., Liu, H., Ma, Y., Bi, G., Zhao, W., El-Kassaby, Y.A., Porth, I., Li, G., Zhang, R.-G., Mao, J.-F.. DOI 10.1111/nph.18173

Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation Frontiers in Plant Science, 2022. Nie, S., Tian, X.-C., Kong, L., Zhao, S.-W., Chen, Z.-Y., Jiao, S.-Q., El-Kassaby, Y.A., Porth, I., Yang, F.-S., Zhao, W., Mao, J.-F.. DOI 10.3389/fpls.2022.1006904

Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change Communications Biology, 2022. Ma, B., Wu, J., Shi, T.-L., Yang, Y.-Y., Wang, W.-B., Zheng, Y., Su, S.-C., Yao, Y.-C., Xue, W.-B., Porth, I., El-Kassaby, Y.A., Leng, P.-S., Hu, Z.-H., Mao, J.-F.. DOI 10.1038/s42003-022-03646-9

Global urban environmental change drives adaptation in white clover Science, 2022. Santangelo, J.S., Ness, R.W., Cohan, B., Fitzpatrick, C.R., Innes, S.G., Koch, S., Miles, L.S., Munim, S., Peres-Neto, P.R., Prashad, C., Tong, A.T., Aguirre, W.E., Akinwole, P.O., Alberti, M., Álvarez, J., Anderson, J.T., Anderson, J.J., Ando, Y., Andrew, N.R., Angeoletto, F., Anstett, D.N., Anstett, J., Aoki-Gonçalves, F., Andis Arietta, A.Z., Arroyo, M.T.K., Austen, E.J., Baena-Díaz, F., Barker, C.A., Baylis, H.A., Beliz, J.M., Benitez-Mora, A., Bickford, D., Biedebach, G., Blackburn, G.S., Boehm, M.M.A., Bonser, S.P., Bonte, D., Bragger, J.R., Branquinho, C., Brans, K.I., Bresciano, J.C., Brom, P.D., Bucharova, A., Burt, B., Cahill, J.F., Campbell, K.D., Carlen, E.J., Carmona, D., Castellanos, M.C., Centenaro, G., Chalen, I., Chaves, J.A., Chávez-Pesqueira, M., Chen, X.-Y., Chilton, A.M., Chomiak, K.M., Cisneros-Heredia, D.F., Cisse, I.K., Classen, A.T., Comerford, M.S., Fradinger, C.C., Corney, H., Crawford, A.J., Crawford, K.M., Dahirel, M., David, S., De Haan, R., Deacon, N.J., Dean, C., del-Val, E., Deligiannis, E.K., Denney, D., Dettlaff, M.A., DiLeo, M.F., Ding, Y.-Y., Domínguez-López, M.E., Dominoni, D.M., Draud, S.L., Dyson, K., Ellers, J., Espinosa, C.I., Essi, L., Falahati-Anbaran, M., Falcão, J.C.F., Fargo, H.T., Fellowes, M.D.E., Fitzpatrick, R.M., Flaherty, L.E., Flood, P.J., Flores, M.F., Fornoni, J., Foster, A.G., Frost, C.J., Fuentes, T.L., Fulkerson, J.R., Gagnon, E., Garbsch, F., Garroway, C.J., Gerstein, A.C., Giasson, M.M., Girdler, E.B., Gkelis, S., Godsoe, W., Golemiec, A.M., Golemiec, M., González-Lagos, C., Gorton, A.J., Gotanda, K.M., Granath, G., Greiner, S., Griffiths, J.S., Grilo, F., Gundel, P.E., Hamilton, B., Hardin, J.M., He, T., Heard, S.B., Henriques, A.F., Hernández-Poveda, M., Hetherington-Rauth, M.C., Hill, S.J., Hochuli, D.F., Hodgins, K.A., Hood, G.R., Hopkins, G.R., Hovanes, K.A., Howard, A.R., Hubbard, S.C., Ibarra-Cerdeña, C.N., Iñiguez-Armijos, C., Jara-Arancio, P., Jarrett, B.J.M., Jeannot, M., Jiménez-Lobato, V., Johnson, M., Johnson, O., Johnson, P.P., Johnson, R., Josephson, M.P., Jung, M.C., Just, M.G., Kahilainen, A., Kailing, O.S., Kariñho-Betancourt, E., Karousou, R., Kirn, L.A., Kirschbaum, A., Laine, A.-L., LaMontagne, J.M., Lampei, C., Lara, C., Larson, E.L., Lázaro-Lobo, A., Le, J.H., Leandro, D.S., Lee, C., Lei, Y., León, C.A., Lequerica Tamara, M.E., Levesque, D.C., Liao, W.-J., Ljubotina, M., Locke, H., Lockett, M.T., Longo, T.C., Lundholm, J.T., MacGillavry, T., Mackin, C.R., Mahmoud, A.R., Manju, I.A., Mariën, J., Nayeli Martínez, D., Martínez-Bartolomé, M., Meineke, E.K., Mendoza-Arroyo, W., Merritt, T.J.S., Merritt, L.E.L., Migiani, G., Minor, E.S., Mitchell, N., Bazargani, M.M., Moles, A.T., Monk, J.D., Moore, C.M., Morales-Morales, P.A., Moyers, B.T., Muñoz-Rojas, M., Munshi-South, J., Murphy, S.M., Murúa, M.M., Neila, M., Nikolaidis, O., Njunji, I., Nosko, P., Núñez-Farfán, J., Ohgushi, T., Olsen, K.M., Opedal, Ø.H., Ornelas, C., Parachnowitsch, A.L., Paratore, A.S., Parody-Merino, A.M., Paule, J., Paulo, O.S., Pena, J.C., Pfeiffer, V.W., Pinho, P., Piot, A., Porth, I.M., Poulos, N., Puentes, A., Qu, J., Quintero-Vallejo, E., Raciti, S.M., Raeymaekers, J.A.M., Raveala, K.M., Rennison, D.J., Ribeiro, M.C., Richardson, J.L., Rivas-Torres, G., Rivera, B.J., Roddy, A.B., Rodriguez-Muñoz, E., Román, J.R., Rossi, L.S., Rowntree, J.K., Ryan, T.J., Salinas, S., Sanders, N.J., Santiago-Rosario, L.Y., Savage, A.M., Scheepens, J.F., Schilthuizen, M., Schneider, A.C., Scholier, T., Scott, J.L., Shaheed, S.A., Shefferson, R.P., Shepard, C.A., Shykoff, J.A., Silveira, G., Smith, A.D., Solis-Gabriel, L., Soro, A., Spellman, K.V., Whitney, K.S., Starke-Ottich, I., Stephan, J.G., Stephens, J.D., Szulc, J., Szulkin, M., Tack, A.J.M., Tamburrino, Í., Tate, T.D., Tergemina, E., Theodorou, P., Thompson, K.A., Threlfall, C.G., Tinghitella, R.M., Toledo-Chelala, L., Tong, X., Uroy, L., Utsumi, S., Vandegehuchte, M.L., VanWallendael, A., Vidal, P.M., Wadgymar, S.M., Wang, A.-Y., Wang, N., Warbrick, M.L., Whitney, K.D., Wiesmeier, M., Tristian Wiles, J., Wu, J., Xirocostas, Z.A., Yan, Z., Yao, J., Yoder, J.B., Yoshida, O., Zhang, J., Zhao, Z., Ziter, C.D., Zuellig, M.P., Zufall, R.A., Zurita, J.E., Zytynska, S.E., Johnson, M.T.J.. DOI 10.1126/science.abk0989

Genome-scale phylogeography resolves the native population structure of the Asian longhorned beetle, <i>Anoplophora glabripennis</i> (Motschulsky) Evolutionary Applications, 2022. Cui, Mingming, Wu, Yunke, Javal, Marion, Giguere, Isabelle, Roux, Geraldine, Andres, Jose A., Keena, Melody, Shi, Juan, Wang, Baode, Braswell, Evan, Pfister, Scott E., Hamelin, Richard, Roe, Amanda, Porth, Ilga. DOI 10.1111/EVA.13381

Editorial: Genomic basis of adaptations to new environments in expansive and invasive species Frontiers in Ecology and Evolution, 2022. Biedrzycka, A., Fijarczyk, A., Kloch, A., Porth, I.M.. DOI 10.3389/fevo.2022.974649

Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental <i>Populus tremuloides</i> Plants, People, Planet, 2022. Goessen, Roos, Isabel, Nathalie, Wehenkel, Christian, Pavy, Nathalie, Tischenko, Lisa, Touchette, Lyne, Giguere, Isabelle, Gros-Louis, Marie-Claude, Laroche, Jerome, Boyle, Brian, Soolanayakanahally, Raju, Mock, Karen, Hernandez-Velasco, Javier, Simental-Rodriguez, Sergio Leonel, Bousquet, Jean, Porth, Ilga M.. DOI 10.1002/PPP3.10297

Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger Horticulture Research, 2021/12. DOI 10.1038/s41438-021-00599-8

Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome Horticulture Research, 2021/12. DOI 10.1038/s41438-021-00614-y

Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance Frontiers in Plant Science, 2021/11/22. DOI 10.3389/fpls.2021.766389

Variation in Platycladus orientalis (Cupressaceae) Reproductive Output and Its Effect on Seed Orchard Crops’ Genetic Diversity Forests, 2021/10/20. DOI 10.3390/f12111429

How to put forest and conservation genomics into motion for and with Indigenous communities? The Forestry Chronicle, 2021/09. DOI 10.5558/tfc2021-031

Comment mettre la génomique forestière et la génomique de la conservation au service des communautés autochtones? The Forestry Chronicle, 2021/09. DOI 10.5558/tfc2021-026

Quercus species divergence is driven by natural selection on evolutionarily less integrated traits Heredity, 2021/02. DOI 10.1038/s41437-020-00378-6

UV-B-induced molecular mechanisms of stress physiology responses in the major northern Chinese conifer Pinus tabuliformis Carr. Tree Physiology, 2021/01/08. DOI 10.1093/treephys/tpaa180

A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes Scientific Data, 2021. Zhou, S.-S., Yan, X.-M., Zhang, K.-F., Liu, H., Xu, J., Nie, S., Jia, K.-H., Jiao, S.-Q., Zhao, W., Zhao, Y.-J., Porth, I., El Kassaby, Y.A., Wang, T., Mao, J.-F.. DOI 10.1038/s41597-021-00968-x

Chromosome-level genome assembly of a parent species of widely cultivated azaleas Nature Communications, 2020/12. DOI 10.1038/s41467-020-18771-4

Linkage disequilibrium vs. pedigree: Genomic selection prediction accuracy in conifer species PLOS ONE, 2020/06/10. DOI 10.1371/journal.pone.0232201

Development of a Large Gene-Associated SSR Marker Set and in-Depth Genetic Characterization in Scarlet Sage Frontiers in Genetics, 2020/05/21. DOI 10.3389/fgene.2020.00504

Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies Frontiers in Genetics, 2020/01/28. DOI 10.3389/fgene.2019.01384

The Terpene Synthase Gene Family in Norway Spruce Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_11

The Spruce Genome Springer International Publishing, 2020. DOI 10.1007/978-3-030-21001-4

Prospects: The Spruce Genome, a Model for Understanding Gymnosperm Evolution and Supporting Tree Improvement Efforts Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_13

Genomic Selection in Canadian Spruces Compendium of Plant Genomes, 2020. DOI 10.1007/978-3-030-21001-4_8

Functional and morphological evolution in gymnosperms: A portrait of implicated gene families Evolutionary Applications, 2020. De La Torre, Amanda R., Piot, Anthony, Liu, Bobin, Wilhite, Benjamin, Weiss, Matthew, Porth, Ilga. DOI 10.1111/EVA.12839

An Applied Empirical Framework for Invasion Science: Confronting Biological Invasion Through Collaborative Research Aimed at Tool Production Annals of the Entomological Society of America, 2020. Blackburn, Gwylim S., Bilodeau, Pierre, Cooke, Tracey, Cui, Mingming, Cusson, Michel, Hamelin, Richard C., Keena, Melody A., Picq, Sandrine, Roe, Amanda D., Shi, Juan, Wu, Yunke, Porth, Ilga. DOI 10.1093/AESA/SAZ072

LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes Frontiers in Genetics, 2019/11/26. DOI 10.3389/fgene.2019.01192

Inter- and Intra-Generation Genomic Predictions for Douglas-fir Growth in Unobserved Environments 2019/02. Ratcliffe B, Thistlethwaite F, El-Dien OG, Cappa EP, Porth I, Klápště J, Chen C, Wang T, Stoehr M, El-Kassaby YA. DOI 10.1101/540765

In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues BMC Genomics, 2019. Zhou, Shan-Shan, Xing, Zhen, Liu, Hui, Hu, Xian-Ge, Gao, Qiong, Xu, Jie, Jiao, Si-Qian, Jia, Kai-Hua, Jin, Yu Qing, Zhao, Wei, Porth, Ilga, El-Kassaby, Yousry A., Mao, Jian-Feng. DOI 10.1186/S12864-019-5584-6

Genomic selection of juvenile height across a single-generational gap in Douglas-fir Heredity, 2019. Thistlethwaite, Frances R., Ratcliffe, Blaise, Klapste, Jaroslav, Porth, Ilga, Chen, Charles, Stoehr, Michael U., El-Kassaby, Yousry A.. DOI 10.1038/S41437-018-0172-0

Genome sequence of Malania oleifera, a tree with great value for nervonic acid production GigaScience, 2019. Xu, Chao-Qun, Liu, Hui, Zhou, Shan-Shan, Zhang, Dong-Xu, Zhao, Wei, Wang, Sihai, Chen, Fu, Sun, Yan-Qiang, Nie, Shuai, Jia, Kai-Hua, Jiao, Si-Qian, Zhang, Ren-Gang, Yun, Quan-Zheng, Guan, Wenbin, Wang, Xuewen, Gao, Qiong, Bennetzen, Jeffrey L., Maghuly, Fatemeh, Porth, Ilga, Van de Peer, Yves, Wang, Xiao-Ru, Ma, Yongpeng, Mao, Jian-Feng. DOI 10.1093/GIGASCIENCE/GIY164

Gene copy number variations involved in balsam poplar (Populus balsamifera L.) adaptive variations Molecular Ecology, 2019. Prunier, Julien, Giguere, Isabelle, Ryan, Natalie, Guy, Robert, Soolanayakanahally, Raju, Isabel, Nathalie, MacKay, John, Porth, Ilga. DOI 10.1111/MEC.14836

Development of novel EST-SSR markers for <i>Ephedra sinica</i> (Ephedraceae) by transcriptome database mining Applications in Plant Sciences, 2019. Jiao, Si-Qian, Sun, Yan-Qiang, Zhang, Dong-Xu, Gao, Qiong, Jin, Yuqing, Liu, Hui, Ma, Yongpeng, Yang, Yong, Porth, Ilga, Mao, Jian-Feng. DOI 10.1002/APS3.1212

Biosurveillance of forest insects: part Iintegration and application of genomic tools to the surveillance of non-native forest insects Journal of Pest Science, 2019. Roe, Amanda D., Torson, Alex S., Bilodeau, Guillaume, Bilodeau, Pierre, Blackburn, Gwylim S., Cui, Mingming, Cusson, Michel, Doucet, Daniel, Griess, Verena C., Lafond, Valentine, Paradis, Gregory, Porth, Ilga, Prunier, Julien, Srivastava, Vivek, Tremblay, Emilie, Uzunovic, Adnan, Yemshanov, Denys, Hamelin, Richard C.. DOI 10.1007/S10340-018-1027-4